PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003647
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 262aa    MW: 28483.3 Da    PI: 9.5584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003647genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19132182255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Cla003647 132 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAYRMRG 182
                8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-32131190IPR001471AP2/ERF domain
CDDcd000181.96E-31131190No hitNo description
PfamPF008477.3E-14132182IPR001471AP2/ERF domain
PROSITE profilePS5103224.184132190IPR001471AP2/ERF domain
SMARTSM003804.8E-39132196IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-23132192IPR016177DNA-binding domain
PRINTSPR003671.1E-10133144IPR001471AP2/ERF domain
PRINTSPR003671.1E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MYQSTKTESD FGFLDPIRRH LLGESEISAA NAAAPGGRPT PVFSRSGSFS SLIPCLEDNW  60
GDLPLKVDDS EDMMLAAVLR DAVGAGWVPS LGSCDFGFST VKSEPEVLPV SYPVVLPNVT  120
VKPTVVPAKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTYETAEDAA LAYDRAAYRM  180
RGSRALLNFP LRVNSGEPEP VRVTSKRSSP EVSSSPKRRK KVGSTVEGGG VQVEQQVASF  240
THGGQLFVSQ CQHLANNYKK LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-43128197170ATERF1
2gcc_A1e-43128197170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221PKRRKKV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437026.11e-172PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803371e-80EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0A0KKS01e-170A0A0A0KKS0_CUCSA; AP2/ERF domain-containing transcription factor
STRINGGLYMA01G41520.12e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-67ethylene responsive element binding factor 1